What is the Neural Link?

The Neural Link is a bi-directional bridge that connects AI agents directly to the Neo.mjs runtime. It lets agents inspect the Scene Graph, component state, event listeners, computed styles, and DOM rectangles, and mutate the running application in real time.

Why is Neo.mjs called an Application Engine instead of a framework?

Neo.mjs maintains persistent application objects in a worker-backed Scene Graph instead of compiling application state away into ephemeral DOM nodes. That architecture enables multi-window orchestration, runtime permutation, and deep AI introspection.

What is Context Engineering?

Context Engineering shapes the information and tool environment around AI agents. Neo.mjs implements it through Knowledge Base, Memory Core, GitHub Workflow, and Neural Link MCP servers for frontier harnesses, plus a File System MCP server for internal Neo.ai.Agent local loops.

What is the Neo.mjs Agent OS?

The Neo.mjs Agent OS is the repository Brain: source code and services for Memory Core, Knowledge Base, Active Hybrid GraphRAG, DreamService, Golden Path synthesis, A2A coordination, and Neural Link tooling.

Frontmatter

id	9534
title	Rename mcp-stdio.mjs to mcp-server.mjs
state	Closed
labels	enhancementairefactoring
assignees	tobiu
createdAt	Mar 23, 2026, 6:20 PM
updatedAt	Mar 23, 2026, 6:30 PM
githubUrl	https://github.com/neomjs/neo/issues/9534
author	tobiu
commentsCount	1
parentIssue	null
subIssues	[]
subIssuesCompleted	0
subIssuesTotal	0
contentTrust
projected
quarantined	0
signals	[]
blockedBy	[]
blocking	[]
closedAt	Mar 23, 2026, 6:30 PM

Rename mcp-stdio.mjs to mcp-server.mjs

Closed v12.1.0/archive-v12-1-0-chunk-2 enhancementairefactoring

tobiu commented on Mar 23, 2026, 6:20 PM

Description

Currently, the entry point files for our MCP servers are named mcp-stdio.mjs. With the introduction of the dual-transport architecture (supporting both stdio and sse via StreamableHTTPServerTransport), this name is no longer accurate and is misleading.

We need to rename these files to a more transport-agnostic name, such as mcp-server.mjs.

Tasks

Rename ai/mcp/server/*/mcp-stdio.mjs to ai/mcp/server/*/mcp-server.mjs
Update package.json scripts (ai:mcp-server-...)
Update mentions in documentation files (e.g., learn/guides/mcp/...)
Update mentions in .gemini/settings.json and similar setup configs.
Breaking Change Warning: This is a breaking change for any users who have hardcoded the mcp-stdio.mjs path in their AI client configurations (like Claude Desktop or Gemini CLI). This needs to be highlighted in the release notes.

tobiu Mar 23, 2026, 6:29 PM

Input from Gemini 3.1 Pro:

✦ I have successfully renamed all mcp-stdio.mjs files to mcp-server.mjs. I also updated the references in package.json, the memory-core HealthService, and all related documentation files. The changes have been committed and pushed.